R/exploratory_analysis.R
exploratory_analysis.Rd
Exploratory analysis of DESeq2 data
exploratory_analysis(dds, species, metadata)
DESeqDataSet object created by DESeq2::DESeq
DESeq2::DESeq
character string specifying the name of the species. Only 'human', and 'mouse' are supported at present. [DEFAULT = human].
'human'
'mouse'
list created by sanity_check_chip and with raw count data stored in metadata$counts. Created as part of run_chip
sanity_check_chip
metadata$counts
run_chip