R/deseq2_analysis.R
deseq2_analysis.Rd
Run DESeq2 analysis on ChIP/ATAC-seq count data
deseq2_analysis(metadata, species)
list created by sanity_check_chip and with raw count data stored in metadata$counts. Created as part of run_chip
sanity_check_chip
metadata$counts
run_chip
character string specifying the name of the species. Only 'human', and 'mouse' are supported at present. [DEFAULT = human].
'human'
'mouse'